DC-005: Fix all 138 broken test paths after src/ refactor

After the DC-005 module reorganization (41 files moved into src/ subdirs),
138 test suites failed because the refactor script's path-rewrite logic
missed three categories:

1. Files inside src/ doing 'require("./src/...")' — should be 'require("../...")'
2. Files in src/X/Y/ doing 'require("../../../src/...")' — should be 'require("../../...")'
3. Test files in __tests__/ with leftover 'require("../../../src/...")' paths

Root cause: the original refactor script ran before all files were moved,
so it computed relative paths against stale filesystem state.

Result:
- 30/30 test suites pass
- 879/879 tests pass (was: 18/30 suites, 614/687 tests)

Also fixed:
- routes/apps/restore.js: wrong responses import path
- routes/*/*.js: '../../src/utilities/X' → '../src/utilities/X' (depth 2 routes)

dashcaddy-api/__tests__/dns-propagation.test.js

@@ -24,7 +24,7 @@ jest.mock('dns', () => {
   };
 });
 
-const DNSPropagationChecker = require('../dns-propagation');
+const DNSPropagationChecker = require('../src/dns/dns-propagation');
 
 describe('DNSPropagationChecker', () => {
   let checker;